Publikationen 2015

Inhaltsverzeichnis

Biologie


Mutant MHC class II epitopes drive therapeutic immune responses to cancer
Sebastian Kreiter, Mathias Vormehr, Niels van de Roemer, Mustafa Diken, Martin Löwer, Jan Diekmann, Sebastian Boegel, Barbara Schrörs, Fulvia Vascotto, John C. Castle, Arbel D. Tadmor, Stephen P. Schoenberger, Christoph Huber, Özlem Türeci & Ugur Sahin
Nature 520, 692-696 (30 April 2015) doi:10.1038/nature14426


Comprehensive translational control of tyrosine kinase expression by upstream open reading frames.
Wethmar K, Schulz J, Muro EM, Talyan S, Andrade-Navarro MA, Leutz A
Oncogene. 2015 Jun 22. doi: 10.1038/onc.2015.233. [Epub ahead of print]


Pseudogene biogenesis, implications from chromatione architecture.
E.M. Muro.
Computational Biology Conference [BC]2. Basel, Switzerland. 7th - 10th June 2015.


Improvement of Human Pseudogene genome-wide prediction.
S. Talyan, M.A. Andrade-Navarro, and E.M. Muro.
Computational Biology Conference [BC]2. Basel, Switzerland. 7th - 10th June 2015.


Translational control of proto-oncogene expression by upstream open reading frames (uORFs).
J. Schulz, K. Wethmar, E.M. Muro, S. Talyan, N. Mah, M.A. Andrade-Navarro and A. Leutz.
International PhD Student Cancer Conference (IPSCC). Manchester, UK. June 3rd-5th, 2015.


Informatik


Modeling Recurrent Distributions in Streams using Possible Worlds
Michael Geilke, Andreas Karwath, and Stefan Kramer
accepted for publication in Proceedings of the DSAA 2015.


Predicting Heuristic Search Performance with PageRank Centrality of Local Optima Networks
Herrmann, Sebastian; Rothlauf, Franz
Proceedings of the 2015 Conference on Genetic and Evolutionary Computation, Madrid, July 11-15, 2015, ACM, New York, NY, USA.


On the Bias of Syntactic Geometric Recombination in Genetic Programming and Grammatical Evolution
Thorhauer, Ann; Rothlauf, Franz
Proceedings of the 2015 Conference on Genetic and Evolutionary Computation, Madrid, July 11-15, 2015. ACM, New York, NY, USA 2015.


Denoising Autoencoders for Fast Combinatorial Black Box Optimization
Probst, Malte
Proceedings (Companion) of the 2015 Conference on Genetic and Evolutionary Computation, Madrid, July 11-15, 2015. ACM, New York, NY, USA 2015.


Physik


The ensemble switch method and related approaches to obtain interfacial free energies between coexisting phases from simulations: A brief review
P. Virnau, F. Schmitz, K.Binder
Molecular Simulation (accepted)


Crystal nuclei in melts: A Monte Carlo simulation of a model for attractive colloids
A. Satt, P. Virnau, K. Binder
Molecular Physics (accepted)


Semiflexible Polymer Brushes and the Brush-Mushroom Crossover
S.A. Egorov, H.-P. Hsu, A. Milchev, K. Binder
Soft Matter 11, 2604-2616 (2015)


Finite Size Effects on Liquid-Solid Phase Coexistence and the Estimation of Crystal Nucleation Barriers
A. Statt, P.Virnau, K. Binder
Physical Review Letters 114, 026101 (2015)


Scaling behavior of topologically constrained polymer rings in a melt
Benjamin Trefz and Peter Virnau
Journal of Physics: Condensed Matter (2015), in press


The ensemble switch method for computing interfacial tensions
Schmitz, Fabian; Virnau, Peter
Journal Of Chemical Physics 142, 14 (144108)


Sequence Determines Degree of Knottedness in a Coarse-Grained Protein Model
Wuest, Thomas; Reith, Daniel; Virnau, Peter
Physical Review Letters, 114, 2 (028102)