Acknowledgement
Bei jeder Publikation, für welche die HPC Einrichtungen der Universität Mainz genutzt wurden, möchten wir Sie bitten die folgende Passage in Ihren Text aufzunehmen:
Parts of this research were conducted using the supercomputer Mogon and/or advisory services offered by Johannes Gutenberg University Mainz (hpc.uni-mainz.de), which is a member of the AHRP (Alliance for High Performance Computing in Rhineland Palatinate, www.ahrp.info) and the Gauss Alliance e.V.
The authors gratefully acknowledge the computing time granted on the supercomputer Mogon at Johannes Gutenberg University Mainz (hpc.uni-mainz.de).
Author | Title | Year | Journal/Proceedings | DOI/URL |
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Bauer, M.R., Krämer, A., Settanni, G., Jones, R.N., Ni, X., Khan Tareque, R et al. | Targeting Cavity-Creating p53 Cancer Mutations with Small-Molecule Stabilizers: the Y220X Paradigm | 2020 | ACS Chemical Biology Vol. 15(3), pp. 657-668 | DOI URL |
BESIII Collaboration, Ablikim, M., Achasov, M.N., Adlarson, P., Ahmed, S. et al. | Measurement of Proton Electromagnetic Form Factors in e+e−→p¯p in the Energy Region 2.00–3.08 GeV | 2020 | Physical Review Letters Vol. 124(4), pp. 042001 | DOI URL |
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Brüser, R., Liu, Z.L. and Stahlhofen, M. | Three-loop soft function for heavy-to-light quark decays | 2020 | JHEP Vol. 03, pp. 071 | DOI |
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Sevenich, A., Mark, P.S., Behrendt, T., Groß, J. and Opatz, T. | Synthesis of 2,3-Dihydro-4-pyridones, 4-Quinolones, and 2,3-Dihydro-4-azocinones by Visible-Light Photocatalytic Aerobic Dehydrogenation | 2020 | European Journal of Organic Chemistry Vol. 2020(10), pp. 1505-1514 | DOI URL |
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Schafer, T., Muhl, C., Barz, M., Schmid, F. and Settanni, G. | Interactions Between Blood Proteins and Nanoparticles Investigated Using Molecular Dynamics Simulations | 2019 | High Performance Computing in Science and Engineering'18, pp. 63-74 | |
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Baumgartner, M. and Spichtinger, P. | Local Interactions by Diffusion between Mixed-Phase Hydrometeors: Insights from Model Simulations | 2017 | Mathematics of Climate and Weather Forecasting Vol. 3(1), pp. 64-89 | DOI URL |
BESIII Collaboration, Ablikim, M., Achasov, M.N., Ahmed, S., Ai, X.C., Albayrak, O. et al. | Precise Measurement of the e+e−→π+π−J/ψ Cross Section at Center-of-Mass Energies from 3.77 to 4.60 GeV | 2017 | Physical Review Letters Vol. 118(9), pp. 092001 | DOI URL |
BESIII Collaboration, Ablikim, M., Achasov, M.N., Ahmed, S., Ai, X.C., Albayrak, O et al. | Evidence of Two Resonant Structures in e+e−→π+π−hc | 2017 | Physical Review Letters Vol. 118(9), pp. 092002 | DOI URL |
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Collaboration, A. | Measurement of the ZZ production cross section in proton-proton collisions at 𝑠√=8 TeV using the ZZ → ℓ−ℓ+ℓ′−ℓ′+ and 𝑍𝑍→ℓ−ℓ+𝜈𝜈⎯⎯⎯ decay channels with the ATLAS detector | 2017 | Journal of High Energy Physics Vol. 2017(1), pp. 99 | DOI URL |
El Hedri, S., Kaminska, A. and de Vries, M. | A Sommerfeld Toolbox for Colored Dark Sectors | 2017 | Eur. Phys. J. C Vol. 77(9), pp. 622 | DOI |
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Feldmeyer, B., Elsner, D., Alleman, A. and Foitzik, S. | Species-specific genes under selection characterize the co-evolution of slavemaker and host lifestyles | 2017 | BMC Evolutionary Biology Vol. 17(1), pp. 237 | DOI URL |
Gerster, M., Rizzi, M., Silvi, P., Dalmonte, M. and Montangero, S. | Fractional quantum Hall effect in the interacting Hofstadter model via tensor networks | 2017 | Physical Review B Vol. 96(19), pp. 195123 | DOI URL |
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von Hippel, G., Rae, T.D., Shintani, E. and Wittig, H. | Nucleon matrix elements from lattice QCD with all-mode-averaging and a domain-decomposed solver: An exploratory study | 2017 | Nuclear Physics B Vol. 914, pp. 138-159 | DOI URL |
Ibn-Salem, J., Muro, E.M. and Andrade-Navarro, M.A. | Co-regulation of paralog genes in the three-dimensional chromatin architecture | 2017 | Nucleic Acids Research Vol. 45(1), pp. 81-91 | DOI URL |
Jünemann, J., Piga, A., Ran, S.-J., Lewenstein, M., Rizzi, M. and Bermudez, A. | Exploring Interacting Topological Insulators with Ultracold Atoms: The Synthetic Creutz-Hubbard Model | 2017 | Physical Review X Vol. 7(3), pp. 031057 | DOI URL |
Jung, G., Hanke, M. and Schmid, F. | Iterative Reconstruction of Memory Kernels | 2017 | Journal of Chemical Theory and Computation Vol. 13(6), pp. 2481-2488 | DOI URL |
Lauck, M., Förster, C. and Heinze, K. | N-Cobaltocenium Amide as Reactive Nucleophilic Reagent for Donor–Acceptor Bimetallocenes | 2017 | Organometallics Vol. 36(24), pp. 4968-4978 | DOI URL |
Lukáčová-Medvid’ová, M., Rosemeier, J., Spichtinger, P. and Wiebe, B. | IMEX Finite Volume Methods for Cloud Simulation | 2017 | Finite Volumes for Complex Applications VIII - Hyperbolic, Elliptic and Parabolic Problems, pp. 179-187 | DOI |
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Probst, M., Rothlauf, F. and Grahl, J. | Scalability of using Restricted Boltzmann Machines for combinatorial optimization | 2017 | European Journal of Operational Research Vol. 256(2), pp. 368-383 | DOI URL |
Qi, S. and Schmid, F. | Dynamic Density Functional Theories for Inhomogeneous Polymer Systems Compared to Brownian Dynamics Simulations | 2017 | Macromolecules Vol. 50(24), pp. 9831-9845 | DOI URL |
Schäfer, K., Oestereich, M., Gauss, J. and Diezemann, G. | Force probe simulations using a hybrid scheme with virtual sites | 2017 | The Journal of Chemical Physics Vol. 147(13), pp. 134909 | DOI URL |
Settanni, G., Zhou, J., Suo, T., Schöttler, S., Landfester, K., Schmid, F. and Mailänder, V. | Protein corona composition of poly (ethylene glycol)-and poly (phosphoester)-coated nanoparticles correlates strongly with the amino acid composition of the protein surface | 2017 | Nanoscale Vol. 9(6), pp. 2138-2144 | |
Settanni, G., Zhou, J. and Schmid, F. | Interactions between proteins and poly (ethylene-glycol) investigated using molecular dynamics simulations | 2017 | Vol. 921(1)Journal of Physics: Conference Series, pp. 012002 | |
Siebert, J.T., Letz, J., Speck, T. and Virnau, P. | Phase behavior of active Brownian disks, spheres, and dimers | 2017 | Soft Matter Vol. 13(5), pp. 1020-1026 | DOI URL |
Tüting, L., Ye, W., Settanni, G., Schmid, F., Wolf, B.A., Ahijado-Guzmán, R. and Sönnichsen, C. | Potassium Triggers a Reversible Specific Stiffness Transition of Polyethylene Glycol | 2017 | The Journal of Physical Chemistry C Vol. 121(40), pp. 22396-22402 | |
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Berkemeier, T., Steimer, S.S., Krieger, U.K., Peter, T., Pöschl, U. et al. | Ozone uptake on glassy, semi-solid and liquid organic matter and the role of reactive oxygen intermediates in atmospheric aerosol chemistry | 2016 | Physical Chemistry Chemical Physics Vol. 18(18), pp. 12662-12674 | DOI URL |
Collaboration, A. | Search for gluinos in events with an isolated lepton, jets and missing transverse momentum at √𝑠 = 13 Te V with the ATLAS detector | 2016 | The European Physical Journal C Vol. 76(10), pp. 565 | DOI URL |
Collaboration, A. | Search for new resonances in events with one lepton and missing transverse momentum in pp collisions at √𝑠= 13 TeV with the ATLAS detector | 2016 | Physics Letters B Vol. 762, pp. 334-352 | DOI URL |
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Collaboration, A. | Identification of high transverse momentum top quarks in pp collisions at √𝑠=8 TeV with the ATLAS detector | 2016 | Journal of High Energy Physics Vol. 2016(6), pp. 93 | DOI URL |
Decamp, J., Jünemann, J., Albert, M., Rizzi, M., Minguzzi, A. and Vignolo, P. | High-momentum tails as magnetic-structure probes for strongly correlated $\text{SU}\(\ensuremath{\textbackslash}kappa\)$ fermionic mixtures in one-dimensional traps | 2016 | Physical Review A Vol. 94(5), pp. 053614 | DOI URL |
Feldmeyer, B., Mazur, J., Beros, S., Lerp, H., Binder, H. and Foitzik, S. | Gene expression patterns underlying parasite-induced alterations in host behaviour and life history | 2016 | Molecular Ecology Vol. 25(2), pp. 648-660 | DOI URL |
Herrmann, S., Ochoa, G. and Rothlauf, F. | Communities of Local Optima as Funnels in Fitness Landscapes | 2016 | Proceedings of the Genetic and Evolutionary Computation Conference 2016, pp. 325-331 | DOI URL |
Herrmann, S., Ochoa, G. and Rothlauf, F. | Coarse-Grained Barrier Trees of Fitness Landscapes | 2016 | Parallel Problem Solving from Nature – PPSN XIV, pp. 901-910 | DOI |
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Khatib, R., Hasegawa, T., Sulpizi, M., Backus, E.H., Bonn, M. and Nagata, Y. | Molecular dynamics simulations of SFG librational modes spectra of water at the water--air interface | 2016 | The Journal of Physical Chemistry C Vol. 120(33), pp. 18665-18673 | |
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Pušavec Kirar, E., Grošelj, U., Golobič, A., Požgan, F., Pusch, S., Weber, C. et al. | Absolute Configuration Determination of 2,3-Dihydro-1H,5H-pyrazolo[1,2-a]pyrazoles Using Chiroptical Methods at Different Wavelengths | 2016 | The Journal of Organic Chemistry Vol. 81(23), pp. 11802-11812 | DOI URL |
Pusch, S., Schollmeyer, D. and Opatz, T. | A Light-Induced Vinylogous Nazarov-Type Cyclization | 2016 | Organic Letters Vol. 18(13), pp. 3043-3045 | DOI URL |
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Weber, C., Pusch, S., Schollmeyer, D., Münster-Müller, S., Pütz, M. and Opatz, T. | Characterization of the synthetic cannabinoid MDMB-CHMCZCA | 2016 | Beilstein Journal of Organic Chemistry Vol. 12, pp. 2808-2815 | DOI |
Zimmermann, I., Dbeyssi, A., Khaneft, D. and Collaboration, P. | Feasibility studies on time-like proton electromagnetic form factors at PANDA-FAIR | 2016 | Vol. 1735(1)AIP Conference Proceedings, pp. 080004 | |
Aghamalyan, D., Cominotti, M., Rizzi, M., Rossini, D., Hekking, F., Minguzzi, A., Kwek, L.-C. and Amico, L. | Coherent superposition of current flows in an atomtronic quantum interference device | 2015 | New Journal of Physics Vol. 17(4), pp. 045023 | DOI URL |
Baker, M.J. and others | The Coannihilation Codex | 2015 | JHEP Vol. 12, pp. 120 | DOI |
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Brühl, C., Lelieveld, J., Tost, H., Höpfner, M. and Glatthor, N. | Stratospheric sulfur and its implications for radiative forcing simulated by the chemistry climate model EMAC | 2015 | Journal of Geophysical Research: Atmospheres Vol. 120(5), pp. 2103-2118 | DOI URL |
González-Domínguez, J., Wienbrandt, L., Kässens, J.C., Ellinghaus, D., Schimmler, M. and Schmidt, B. | Parallelizing Epistasis Detection in GWAS on FPGA and GPU-Accelerated Computing Systems | 2015 | IEEE/ACM Transactions on Computational Biology and Bioinformatics Vol. 12(5), pp. 982-994 | DOI |
González-Domínguez, J., Kässens, J.C., Wienbrandt, L. and Schmidt, B. | Large-scale genome-wide association studies on a GPU cluster using a CUDA-accelerated PGAS programming model: | 2015 | The International Journal of High Performance Computing Applications | DOI URL |
González-Domínguez, J. and Schmidt, B. | GPU-accelerated exhaustive search for third-order epistatic interactions in case–control studies | 2015 | Journal of Computational Science Vol. 8, pp. 93-100 | DOI URL |
Kässens, J.C., Wienbrandt, L., González-Domínguez, J., Schmidt, B. and Schimmler, M. | High-speed exhaustive 3-locus interaction epistasis analysis on FPGAs | 2015 | Journal of Computational Science Vol. 9, pp. 131-136 | DOI URL |
Köhler, S., Schmid, F. and Settanni, G. | The internal dynamics of fibrinogen and its implications for coagulation and adsorption | 2015 | PLoS computational biology Vol. 11(9) | |
Köhler, S., Schmid, F. and Settanni, G. | The Internal Dynamics of Fibrinogen and Its Implications for Coagulation and Adsorption | 2015 | PLOS Computational Biology Vol. 11(9), pp. e1004346 | DOI URL |
Köhler, S., Schmid, F. and Settanni, G. | Molecular dynamics simulations of the initial adsorption stages of fibrinogen on mica and graphite surfaces | 2015 | Langmuir Vol. 31(48), pp. 13180-13190 | |
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Nizkaya, T.V., Asmolov, E.S., Zhou, J., Schmid, F. and Vinogradova, O.I. | Flows and mixing in channels with misaligned superhydrophobic walls | 2015 | Physical Review E Vol. 91(3), pp. 033020 | DOI URL |
Ouwersloot, H.G., Pozzer, A., Steil, B., Tost, H. and Lelieveld, J. | Revision of the convective transport module CVTRANS 2.4 in the EMAC atmospheric chemistry–climate model | 2015 | Geoscientific Model Development Vol. 8(8), pp. 2435-2445 | DOI URL |
Pozzer, A., de Meij, A., Yoon, J., Tost, H., Georgoulias, A.K. and Astitha, M. | AOD trends during 2001–2010 from observations and model simulations | 2015 | Atmospheric Chemistry and Physics Vol. 15(10), pp. 5521-5535 | DOI URL |
Qi, S., Klushin, L.I., Skvortsov, A.M., Polotsky, A.A. and Schmid, F. | Stimuli-Responsive Brushes with Active Minority Components: Monte Carlo Study and Analytical Theory | 2015 | Macromolecules Vol. 48(11), pp. 3775-3787 | DOI URL |
Richard, D. and Speck, T. | The role of shear in crystallization kinetics: From suppression to enhancement | 2015 | Scientific Reports Vol. 5(1), pp. 1-7 | DOI URL |
Schappert, S. and Wirth, V. | Origin and Flow History of Air Parcels in Orographic Banner Clouds | 2015 | Journal of the Atmospheric Sciences Vol. 72(9), pp. 3389-3403 | DOI URL |
Scholtalbers, J., Boegel, S., Bukur, T., Byl, M., Goerges, S., Sorn, P. et al. | TCLP: an online cancer cell line catalogue integrating HLA type, predicted neo-epitopes, virus and gene expression | 2015 | Genome Medicine Vol. 7(1), pp. 118 | DOI URL |
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González-Domínguez, J., Schmidt, B., Kässens, J.C. and Wienbrandt, L. | Hybrid CPU/GPU Acceleration of Detection of 2-SNP Epistatic Interactions in GWAS | 2014 | Euro-Par 2014 Parallel Processing, pp. 680-691 | DOI |
Hundt, C., Schmidt, B. and Schömer, E. | CUDA-Accelerated Alignment of Subsequences in Streamed Time Series Data | 2014 | 2014 43rd International Conference on Parallel Processing, pp. 10-19 | DOI |
Hundt, C. | GEM: an elastic and translation-invariant similarity measure with automatic trend adjustment. | 2014 | , pp. 105-112 | DOI |
Kässens, J.C., González-Domínguez, J., Wienbrandt, L. and Schmidt, B. | UPC++ for bioinformatics: A case study using genome-wide association studies | 2014 | 2014 IEEE International Conference on Cluster Computing (CLUSTER), pp. 248-256 | DOI |
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Mann, G.W., Carslaw, K.S., Reddington, C.L., Pringle, K.J., et al. | Intercomparison and evaluation of global aerosol microphysical properties among AeroCom models of a range of complexity | 2014 | Atmospheric Chemistry and Physics Vol. 14(9), pp. 4679-4713 | DOI URL |
Rybka, H. and Tost, H. | Uncertainties in future climate predictions due to convection parameterisations | 2014 | Atmospheric Chemistry and Physics Vol. 14(11), pp. 5561-5576 | DOI URL |
Tsigaridis, K., Daskalakis, N., Kanakidou, M., Adams, P.J., Artaxo, P., Bahadur, R., et al. | The AeroCom evaluation and intercomparison of organic aerosol in global models | 2014 | Atmospheric Chemistry and Physics Vol. 14(19), pp. 10845-10895 | DOI URL |
Wienbrandt, L., Kässens, J.C., González-Domínguez, J., Schmidt, B., Ellinghaus, D. and Schimmler, M. | FPGA-based Acceleration of Detecting Statistical Epistasis in GWAS | 2014 | Procedia Computer Science Vol. 29, pp. 220-230 | DOI URL |
Andreani, T., Albrecht, S., Fontaine, J.-F. and Andrade-Navarro, M.A. | Computational identification of cell-specific variable regions in ChIP-seq data | Nucleic Acids Research | DOI URL | |
Moll, J., Wang, C., Päpcke, A., Förster, C., Resch-Genger, U., Lochbrunner, S. and Heinze, K. | Green Light Activation of Push-Pull Ruthenium(II) Complexes | Chemistry – A European Journal Vol. n/a(n/a) | DOI URL | |
Rummel, L., Kaus, B.J.P., Baumann, T.S., White, R.W. and Riel, N. | Insights into the compositional evolution of crustal magmatic systems from coupled petrological-geodynamical models | Journal of Petrology | DOI URL |