Publikationen

Acknowledgement

Bei jeder Publikation, für welche die HPC Einrichtungen der Universität Mainz genutzt wurden, möchten wir Sie bitten die folgende Passage in Ihren Text aufzunehmen:

Parts of this research were conducted using the supercomputer MOGON 2 and/or advisory services offered by Johannes Gutenberg University Mainz (hpc.uni-mainz.de), which is a member of the AHRP (Alliance for High Performance Computing in Rhineland Palatinate,  www.ahrp.info) and the Gauss Alliance e.V.

The authors gratefully acknowledge the computing time granted on the supercomputer MOGON 2 at Johannes Gutenberg University Mainz (hpc.uni-mainz.de).

Publikationsstatisktik

 

Statistik

2015

Biologie


Mutant MHC class II epitopes drive therapeutic immune responses to cancer
Sebastian Kreiter, Mathias Vormehr, Niels van de Roemer, Mustafa Diken, Martin Löwer, Jan Diekmann, Sebastian Boegel, Barbara Schrörs, Fulvia Vascotto, John C. Castle, Arbel D. Tadmor, Stephen P. Schoenberger, Christoph Huber, Özlem Türeci & Ugur Sahin
Nature 520, 692-696 (30 April 2015) doi:10.1038/nature14426


Comprehensive translational control of tyrosine kinase expression by upstream open reading frames.
Wethmar K, Schulz J, Muro EM, Talyan S, Andrade-Navarro MA, Leutz A
Oncogene. 2015 Jun 22. doi: 10.1038/onc.2015.233. [Epub ahead of print]


Pseudogene biogenesis, implications from chromatione architecture.
E.M. Muro.
Computational Biology Conference [BC]2. Basel, Switzerland. 7th - 10th June 2015.


Improvement of Human Pseudogene genome-wide prediction.
S. Talyan, M.A. Andrade-Navarro, and E.M. Muro.
Computational Biology Conference [BC]2. Basel, Switzerland. 7th - 10th June 2015.


Translational control of proto-oncogene expression by upstream open reading frames (uORFs).
J. Schulz, K. Wethmar, E.M. Muro, S. Talyan, N. Mah, M.A. Andrade-Navarro and A. Leutz.
International PhD Student Cancer Conference (IPSCC). Manchester, UK. June 3rd-5th, 2015.


Informatik


Modeling Recurrent Distributions in Streams using Possible Worlds
Michael Geilke, Andreas Karwath, and Stefan Kramer
accepted for publication in Proceedings of the DSAA 2015.


Predicting Heuristic Search Performance with PageRank Centrality of Local Optima Networks
Herrmann, Sebastian; Rothlauf, Franz
Proceedings of the 2015 Conference on Genetic and Evolutionary Computation, Madrid, July 11-15, 2015, ACM, New York, NY, USA.


On the Bias of Syntactic Geometric Recombination in Genetic Programming and Grammatical Evolution
Thorhauer, Ann; Rothlauf, Franz
Proceedings of the 2015 Conference on Genetic and Evolutionary Computation, Madrid, July 11-15, 2015. ACM, New York, NY, USA 2015.


Denoising Autoencoders for Fast Combinatorial Black Box Optimization
Probst, Malte
Proceedings (Companion) of the 2015 Conference on Genetic and Evolutionary Computation, Madrid, July 11-15, 2015. ACM, New York, NY, USA 2015.


Physik


The ensemble switch method and related approaches to obtain interfacial free energies between coexisting phases from simulations: A brief review
P. Virnau, F. Schmitz, K.Binder
Molecular Simulation (accepted)


Crystal nuclei in melts: A Monte Carlo simulation of a model for attractive colloids
A. Satt, P. Virnau, K. Binder
Molecular Physics (accepted)


Semiflexible Polymer Brushes and the Brush-Mushroom Crossover
S.A. Egorov, H.-P. Hsu, A. Milchev, K. Binder
Soft Matter 11, 2604-2616 (2015)


Finite Size Effects on Liquid-Solid Phase Coexistence and the Estimation of Crystal Nucleation Barriers
A. Statt, P.Virnau, K. Binder
Physical Review Letters 114, 026101 (2015)


Scaling behavior of topologically constrained polymer rings in a melt
Benjamin Trefz and Peter Virnau
Journal of Physics: Condensed Matter (2015), in press


The ensemble switch method for computing interfacial tensions
Schmitz, Fabian; Virnau, Peter
Journal Of Chemical Physics 142, 14 (144108)


Sequence Determines Degree of Knottedness in a Coarse-Grained Protein Model
Wuest, Thomas; Reith, Daniel; Virnau, Peter
Physical Review Letters, 114, 2 (028102)


2014

Biologie


Gene expression patterns associated with caste and reproductive status in the ant Temnothorax longispinosus: worker-specific genes are more derived than queen-specific ones.
Feldmeyer B., Elsner D., S. Foitzik
Molecular Ecology 23:151-161 (2014)


A catalog of HLA type, HLA expression, and neo-epitope candidates in human cancer cell lines
Sebastian Boegel, Martin Löwer, Thomas Bukur, Ugur Sahin & John C Castlea
OncoImmunology, 3,8, 2014 DOI:10.4161/21624011.2014.954893


The exon junction complex controls transposable element activity by ensuring faithful splicing of the piwi transcript.
Malone CD, Mestdagh C, Akhtar J, Kreim N, Deinhard P, Sachidanandam R, Treisman J and Roignant JY (2014).
Genes Dev, 28, 1786-1799.


Domestication origin(s) and migration of taurine cattle.
Schreiber, Mona; Wieser, Andreas; Scheu, Amelie; Burger, Joachim; Currat, Mathias:
Metalla Sonderheft 7, Archäometrie und Denkmalpflege 2015

Chemie


Chromatographically separable rotamers of an unhindered amide
Mario Geffe, Lars Andernach, Oliver Trapp and Till Opatz
Beilstein J. Org. Chem. 2014, 10, 701-706. doi:10.3762/bjoc.10.63


A Photochemical One-Pot Three-Component Synthesis of Tetrasubstituted Imidazolesc
Stefan Pusch and Till Opatz
Org. Lett., 2014, 16 (20), pp 5430-5433 DOI: 10.1021/ol502667h


Predicting the stability of surface phases of molybdenum selenides
G. Roma et al.
Appl. Phys. Lett. 104, 061605 (2014).


First-principles investigation of the bulk and low-index surfaces of MoSe2
H. Mirhosseini et al.
Phys. Rev. B 89, 205301 (2014)


Adsorption of Se, Na, and O on the Mo(110) surface: modeling atomic mechanisms at the back contact of thin film chalcopyrite solar cells
G. Roma et al.
TBA


Geowissenschaften

Informatik


Structural Clustering of Millions of Molecular Graphs
Seeland M, Karwath A, Kramer S
Proceedings of the 29th Annual ACM Symposium on Applied Computing, SAC '14 121-128 (2014)


Extracting Information from Support Vector Machines for Pattern-Based Classification.
Seeland M, Maunz A, Karwath A, Kramer S
Proceedings of the 29th Annual ACM Symposium on Applied Computing, SAC '14 129-136(2014)


Large-scale genome-wide association studies on a GPU cluster using a CUDA-accelerated PGAS programming model
Jorge González-Domínguez, Jan C Kässens, Lars Wienbrandt, Bertil Schmidt
International Journal of High Performance Computing Applications May 17, 2015 1094342015585846, doi: 10.1177/1094342015585846


GPU-accelerated exhaustive search for third-order epistatic interactions in case-control studies
Jorge González-Domínguez, Bertil Schmidt
Journal of Computational Science, 8, May 2015, Pages 93-100 doi:10.1016/j.jocs.2015.04.001 http://www.sciencedirect.com/science/article/pii/S1877750315000393


Physik


Controlling the transport of an ion: classical and quantum mechanical solutions
H A Fürst et al
2014 New J. Phys. 16 075007 doi:10.1088/1367-2630/16/7/075007


Lepton Jets from Radiating Dark Matter
Buschmann, Malte and Kopp, Joachim and Liu, Jia and Machado, Pedro A. N.
JHEP, 07, 2015, 045, arxivx 1505.07459


Electroweak ZZjj production in the Standard Model and beyond in the POWHEG-BOX V2B.
Jäger, A. Karlberg, G. Zanderighi
JHEP 1403 (2014) 141.


Next-to-leading-order electroweak corrections to pp -> WW -> 4 leptons in double-pole approximation at the LHC
M. Billoni, S. Dittmaier, B. Jäger, C. Speckner
PoS RADCOR 2013 (2014) 018.


Anisotropic Interfacial Tension, Contact Angles, Line Tensions. A CPU-Based Monte Carlo Study of the Ising Model
B.J. Block, S. Kim, P. Virnau, K. Binder:
Physical Review E 90, 062106 (2014), 1-13.


Logarithmic Size Effects on Interfacial Free Energies: Phenomenological Theory of Monte Carlo Studies
F. Schmitz, P. Virnau, K. Binder
Physical Review E 90, 012128 (2014), 1-19.


Perspective: The Asakura-Oosawa Model, A Colloid Prototype for Bulk and Interfacial Phase Behavior
K. Binder, P. Virnau, A. Statt
Journal of chemical Physics 141, 140901 (2014), 1-10.


Critical Absorption of a Single Macromolecule in Polymer Brushes
A. Milchev, S.A. Egorov, K. Binder
Soft Matter 10, 5974-5990 (2014)


Polymer Absorption in Dense Polymer Brushes Versus Polymer Adsorption on the Brush-Solvent Interface
A. Milchev, S.A. Egorov, K. Binder
EPL 106, 58001 (2014), 1-6.


Determination of the Origin and Magnitude of Logarithmic Finite Size Effects on Interfacial Tension: Role of Interfacial Fluctuations and Domain Breathing
F. Schmitz, P. Virnau, K. Binder:
Physical Review Letters 112, 126701 (2014), 1-5.


Unconventional Ordering Behavior of Semi-Flexible Polymers in Dense Brushes under Compression
A. Milchev, K. Binder:
Soft Matter 10, 3783-3797 (2014)


Computer Simulation of Heterogeneous Nucleation of Colloid Crystals at Planar Walls
B. J. Block, D. Deb, F. Schmitz, A. Statt, A. Tröster, A. Winkler, T. Zykova-Timan, P. Virnau, K. Binder
European Physical Journal-Special Topics 223, 347-361 (2014)


How molecular knots can pass through each other
Trefz, Benjamin; Siebert, Jonathan; Virnau, Peter
Proceedings Of The National Academy Of Sciences Of The United States Of America 111, 22, 7948-7951 (2014)


Wirtschaftsinformatik


Problem Complexity in Parallel Problem Solving
Sebastian Herrmann, Jörn Grahl, Franz Rothlauf
International Workshop on Modeling, Analysis and Management of Social Networks and their Applications (SOCNET 2014, Bamberg, zur Publikation angenommen)


Estimation of Distribution Algorithms using Restricted Boltzmann Machines
Malte Probst, Jörn Grahl, Franz Rothlauf
2014, Evolutionary Computation Journal(Einreichung im April 2014)


An Implicitly Parallel EDA based on Restricted Boltzmann Machines
Malte Probst, Jörn Grahl, Franz Rothlauf
2014, Genetic Evolutionary Computation Conference, zur Publikation angenommen


2013

Biologie


New phylogenomic data support the monophyly of Lophophorata and an Ectoproct-Phoronid clade and indicate that Polyzoa and Kryptrochozoa are caused by systematic bias
Nesnidal MP, Helmkampf M, Meyer A, Witek A, Bruchhaus I, Ebersberger I, Hankeln T, Lieb B, Struck TH, Hausdorf B.
BMC Evol Biol. 2013 Nov 17;13:253


Genomic basis of ecological niche divergence among cryptic sister species of non-biting midges.
Schmidt H, Greshake B, Feldmeyer B, Hankeln T, Pfenninger M.
BMC Genomics. 2013 Jun 10;14:384.


Platyzoan mitochondrial genomes
Wey-Fabrizius AR, Podsiadlowski L, Herlyn H, Hankeln T.
Mol Phylogenet Evol. 2013 Nov;69(2):365-75.


Phylogenetic analyses of endoparasitic Acanthocephala based on mitochondrial genomes suggest secondary loss of sensory organs
Weber M, Wey-Fabrizius AR, Podsiadlowski L, Witek A, Schill RO, Sugar L, Herlyn H, Hankeln T.
Mol Phylogenet Evol. 2013 Jan;66(1):182-9


Galaxy LIMS for next-generation sequencing.
Scholtalbers J, Rößler J, Sorn P, de Graaf J, Boisguérin V, Castle J, Sahin U.
Bioinformatics 2013 May 1;29(9):1233-4. doi: 10.1093/bioinformatics/btt115. Epub 2013 Mar 11. PubMed PMID: 23479349.


HLA typing from RNA-Seq sequence reads
Boegel S, Löwer M, Schäfer M, Bukur T, de Graaf J, Boisguérin V, Türeci O, Diken M, Castle JC, Sahin U.
Genome Med. 2013 Dec 22;4(12):102. [Epub ahead of print] PubMed PMID: 23259685.

Chemie


Electronic signature of the instantaneous asymmetry in the first coordination shell in liquid water
T. D. Kühne and R. Z. Khaliullin
Nature Commun. 4, 1450 (2013).


Liquid methane at extreme temperature and pressure: Implications for models of Uranus and Neptune
D. Richters and T. D. Kühne
JETP Lett. 97, 184 (2013).


Optimal calculation of the pair correlation function for an orthorombic system
K. Röhrig and T. D. Kühne
Phys. Rev. E 87, 045301 (2013).


First principles simulations of amorphous InSb
J. Los, T. D. Kühne, S. Gabardi and M. Bernasconi
Phys. Rev. B 87, 184201 (2013).


Inverse simulated annealing for the determination of amorphous structures
J. Los and T. D. Kühne
Phys. Rev. B 87, 214202 (2013).


Proton Transfer through the Water Gossamer
A. A. Hassanali, F. Giberti, J. Cuny, T. D. Kühne and M. Parrinello
Proc. Nat. Acad. Sci. USA 110, 13723 (2013).


Microscopic properties of liquid water from combined ab initio molecular dynamics and energy decomposition tudies

R. Z. Khaliullin and T. D. Kühne
Phys. Chem. Chem. Phys. 15, 15746 (2013).


Vibrational Signature of Water Molecules in Asymmetric Hydrogen Bonding Environments
C. Zhang, R. Z. Khaliullin, D. Bovi, L. Guidoni and T. D. Kühne
J. Phys. Chem. Lett. 4, 3245 (2013).


Quantum Monte Carlo Study of High Pressure Solid Molecular Hydrogen
S. Azadi, W. M. C. Foulkes and T. D. Kühne
New J. Phys. 15, 113005 (2013).


First principles study of the amorphous In3SbTe2 phase change compound
J. Los, T. D. Kühne, S. Gabardi and M. Bernasconi
Phys. Rev. B 88, 174203 (2013).


Einblicke in die Debatte zur lokalen Koordinationsstruktur in flüssigem Wasser
M. Dömer, T. Spura, R. Z. Khaliullin and T. D. Kühne
Nachr. Chemie 61, 1203 (2013)


Selenium adsorption on Mo(110): A first-principles investigation
G. Roma and L. Chiodo
Phys. Rev. B 87, 245420 (2013)


Adsorption of Se, Na, and O on the Mo(110) surface: modeling atomic mechanisms at the back contact of thin film chalcopyrite solar cells
G. Roma et al.
NA

Informatik


Online Estimation of Discrete Densities
Geilke, M, Karwath, A, Frank, E, and Kramer, S
Proceedings of the 13th IEEE International Conference on Data Mining, pp. 191-200. (2013)


A Large-Scale Empirical Evaluation of Cross-Validation and External Test Set Validation
Gütlein, M, Helma, C, Karwath, A, and Kramer, S
(Q)SAR Molecular Informatics, 32(5-6):516-528. (2013).


CUDASW++ 3.0: accelerating Smith-Waterman protein database search by coupling CPU and GPU SIMD instructions
Y. Liu, A. Wirawan, B. Schmidt
BMC Bioinformatics 14:117, 2013


Musket: amultistage k-mer spectrum based errorcorrector for Illumina sequence data
Y. Liu, J. Schroeder, B. Schmidt
Bioinformatics 29(3): 308-315, 2013


CUDA-enabled Sparse Matrix-Vector Multiplication on GPUs using atomic operations
H.V. Dang, B. Schmidt
Parallel Computing 39(11): 737-750, 2013


Iterative sparse matrix-vector multiplication for accelerating the block Wiedemann algorithm over GF(2) on multi-graphics processing unit systems
B. Schmidt, H. Aribowo, H.-V. Dang
Concurrency and Computation: Practice and Experience 25(4): 586-603,


Structural Difficulty in Grammatical Evolution versus Genetic Programming
Ann Thorhauer, Franz Rothlauf
Blum, C. et al. (Hrsg.): Proceedings of the ACM Genetic and Evolutionary Computation Conference (GECCO 2013), S. 997-1004. ACM Press


What is the right seeding strategy for your product?Results for the Bass-model
Jörn Grahl, Franz Rothlauf
2013, Business Research (BuR), second round

Medizin


Contrast Agent Bolus Dispersion in a Realistic Coronary Artery Geometry: Influence of Outlet Boundary Conditions
K. Sommer, R. Schmidt, D. Graafen, H.-C. Breit, L. M. Schreiber., Ann.
Biomed. Eng., 42 (4), 787-796, 2014, doi: 10.1007/s10439-013-0950-z


Computational Fluid Dynamics Simulations of Contrast Agent Bolus Dispersion in a Coronary Bifurcation: Impact on MRI-based Quantification of Myocardial Perfusion
R. Schmidt, D. Graafen, S. Weber, L.M. Schreiber
Computational and Mathematical Methods in Medicine, Volume 2013 (2013), Article ID 513187, dx.doi.org/10.1155/2013/513187

Physik


Measurement of dijet cross sections in pp collisions at 7 TeV centre-of-mass energy using the ATLAS detector
G. Aad et al. [ATLAS Collaboration]
arXiv:1312.3524 [hep-ex], submitted to JHEP


Measurement of the high-mass Drell-Yan differential cross-section in pp collisions at ?s=7 TeV with the ATLAS detector
G. Aad et al. [ATLAS Collaboration]
Phys.Lett. B 725 (2013) 223-242 (2013), arXiv:1305.4192 [hep-ex]


Search for $t\bar t$ resonances in the lepton plus jets final state with ATLAS using 4.7 fb$^{-1}$ of $pp$ collisions at $\sqrt{s} = 7$ TeV
G. Aad et al. [ATLAS Collaboration],
arXiv:1305.2756 [hep-ex]


Evidence for the spin-0 nature of the Higgs boson using ATLAS data
G. Aad et al. [ATLAS Collaboration]
Phys. Lett. B 726 (2013), pp. 120-144, arXiv:1307.1432 [hep-ex]


Measurements of Higgs boson production and couplings in diboson final states with the ATLAS detector at the LHC
G. Aad et al. [ATLAS Collaboration]
Phys. Lett. B 726 (2013), pp. 88-119, arXiv:1307.1427 [hep-ex]


Next-to-leading order electroweak corrections to pp -> W+W- -> 4 leptons at the LHC in double-pole approximation
M. Billoni, S. Dittmaier, B. Jäger, C. Speckner
JHEP 1312 (2013) 043.


Monte Carlo tools for studies of non-standard electroweak gauge boson interactions in multi-boson processes: A Snowmass White Paper
C.Degrande et al.
arXiv:1309.7890 [hep-ph].


Electroweak W+W-jj prodution at NLO in QCD matched with parton shower in the POWHEG-BOX
B.Jäger, G.Zanderighi
JHEP 1304 (2013) 024.


Direct numerical integration for multi-loop integrals
S. Becker and S. Weinzierl
Eur. Phys. J. C 73, (2013), 2321,


Decomposition of one-loop QCD amplitudes into primitive amplitudes based on shuffle relations
Ch. Reuschle and S. Weinzierl
Phys. Rev. D 88, (2013), 105020,


Dipole subtraction with random polarisations
D. Götz, Ch. Schwan and S. Weinzierl
PoS (RADCOR 2013) 021,


Optimal persistent currents for interacting bosons on a 1D ring with a gauge field
M. Cominotti, D. Rossini, M. Rizzi, F. Hekking, and A. Minguzzi
arXiv:1310.0382


Exploiting seeding of random number generators for efficient domain decomposition parallelization of dissipative particle dynamics
Y. Afshar, F. Schmid, A. Pishevar, S. Worley
Comp. Phys. Comm. 184, 1119 (2013).


The effective slip-length tensor for a flow over weakly stripping stripes
E.S. Asmolov, J. Zhou, F. Schmid, O.I. Vinogradova
Phys. Rev. E 88, 023004 (2013).


Effects of boundaries on structure formation in low-dimensional colloid model systems near the liquid-solid-transition in equilibrium and in external fields and under shear
S. Deutschländer, K. Franzrahe, B. Heinze et al
EPJ-ST 222, 2973 (2013).


A model for rod-coil block copolymers
S. Dolezel, H. Behringer, F. Schmid
Polymer Science, Ser. C 55, 70 (2013).


Fibrinogen flexibility and implication for adsorption
S. Köhler, G. Settanni
Abs. of Papers of the American Chemical Society, 246, Meeting Abstract: 335-POLY (2013).


The flexibility of fibrinogen is important to understand its adsorption behavior
S. Köhler, G. Settanni
European Biophysics Journal with Biophysics Letters, 42, supplement: s92 (2013)


Elastic properties and line tension of self-assembled bilayer membranes
J. Li, K.A. Pastor, A.-C. Shi, F. Schmid, J. Zhou
Phys. Rev. E 88, 012718 (2013).


Understanding the microscopic origin of gold nanoparticles anisotropic growth from molecular dynamics simulations
S.K. Meena and M. Sulpizi
Langmuir, 2013, 29(48), 14954 DOI: 10.1021/la403843n


Monolayer curvature stabilizes nanoscale raft domains in mixed lipid bilayers
S. Meinhardt, R.L.C. Vink, F. Schmid
PNAS 110, 4476 (2013).


A hybrid particle-continuum model in soft-condensed matter simulations
S. Qi, H. Behringer, F. Schmid
NIC Series 46, 193 (2013).


Using field theory to construct hybrid particle-continuum simulation schemes with adaptive resolution for soft matter systems
S. Qi, H. Behringer, F. Schmid
New J. Physics 15, 125009 (2013).


Effects of ligand binding on the mechanical properties of ankyrin repeat protein gankyrin
G. Settanni, D. Serquera, P.E. Marszalek, E. Paci, L.S. Itzhaki,.
PLoS Comput Biol. 9(1):e1002864 (2013).


Fluctuations in lipid bilayers: Are they understood?
F. Schmid
Biophys. Rev. and Lett. 8, 1 (2013).


Self-consistent field approach for crosslinked copolymer materials
F. Schmid
Phys. Rev. Lett. 111, 028303 (2013).


Monte Carlo tests of nucleation concepts in the lattice gas model
F. Schmitz, P. Virnau, K. Binder
Phys. Rev. E 87, 053302 (2013).


Hyperbranched graft-copolymers by "Hypergrafting" of ABm monomers from polydisperse macroinitiator cores: Theory meets synthesis
C. Schüll, H. Rabbel, F. Schmid, H. Frey
Macromolecules 46, 5823 (2013).


Phase separation of colloid polymer mixtures under confinement
A.Statt, A. Winkler, P. Virnau, K. Binder, W.E. Nagel et al. (eds.)
High Peformance Computing in Science and Engineering ’13, 19, Springer-Verlag (2013).


Vibrational Sum Frequency Generation Spectroscopy of the Water Liquid-Vapor Interface from Density Functional Theory Based Molecular Dynamics Simulations
M. Sulpizi, M. Salanne, M. Sprik and M-P. Gaigeot
J. Phys. Chem. Lett., 4 (1), 83 (2013)


Influence of chain stiffness on knottedness in single polymers
P. Virnau, F. Rieger, D. Reith
Biochem. Soc. Trans. 41, 528 (2013).


Stick-slip motion and plastic flow of a two-dimensional colloidal crystal confined to moving corrugated rigid boundaries
D. Wilms, P. Virnau, K. Binder
Mol. Phys. 111, 22 (2013).


Computer simulations of structure, dynamics, and phase behaviour of colloidal fluids in confined geometry and under shear
A.Winkler, D. Winter, P. Chaudhuri et al
EPJ-ST 222, 2787 (2013).


Phase transitions and phase equilibria in spherical confinement
A.Winkler, A. Statt, P. Virnau, K. Binder
Phys. Rev. E 87, 032307 (2013).


Phase separation in colloidal suspensions by collective growth of domains
A.Winkler, P. Virnau, K. Binder, R.G. Winkler, G. Gompper,
Innovatives Supercomputing in Deutschland (inSiDE) 11, 30 (2013)


Hydrodynamic mechanisms of spinodal decomposition in confined colloid-polymer mixtures: A multiparticle collision dynamics study
Winkler, P. Virnau, K. Binder, R.G. Winkler, G. Gompper
J. Chem. Phys. 138, 054901 (2013).


AC-field induced polarization for uncharged colloids in salt solution: A Dissipative Particle Dynamics simulation
J. Zhou, F. Schmid
Eur. Phys. J. E 36, 33 (2013).


Computer simulations of charged colloids in alternating electric fields
J. Zhou, F. Schmid
Eur. Phys. J.: Special topics 222, 2911 (2013).


Dynamic and dielectric response of charged colloids in electrolyte solutions to external electric fields
J. Zhou, R. Schmitz, B. Dünweg, F. Schmid
J. Chem. Phys. 139, 024901 (2013).


Effective slippage on superhydrophobic trapezoidal grooves
J. Zhou, E.S. Asmolov, F. Schmid, O.I. Vinogradova
J. Chem. Phys. 139, 1748708 (2013).